eMatchSite Standalone Package

eMatchSite is a sequence order-independent algorithm for ligand binding site alignment and matching. It accurately identifies pairs of pockets that bind similar compounds even in proteins with different global structures. Furthermore, it tolerates structural distortions in protein models, thus experimentally solved structures are not required.
If you use eMatchSite, please cite the following papers:

eMatchSite is also available as a webserver. Datasets are available for download from here. See the manual for the details on the output file format.

eMatchSite is free of charge under the terms of GNU General Public License for the general public and under a dual license for commercial users.


Source codes

Version (hover) Download Size MD5  

1.0 latest ematchsite-1.0.tar.gz 28M 6f2ac9505cb20d2b586092cd30f8299c  


Compound libraries

Version (hover) Download Size MD5  

Jan 2012 latest ematchsite-lib-jan2012.tar.gz 3.3G aabc13b16cb0897de755193e5c4bca68  


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