Environment variables

Before running eFindSitePPI, you need to set several environmental variables. This example assumes that you have installed all required programs in /usr/local/, as described in previous sections. For custom installations, you need to point eFindSitePPI to correct locations.

[home]$ export PPI_FRTMALIGN=/usr/local/frtmalign/frtmalign

[home]$ export PPI_NACCESS=/usr/local/naccess2.1.1/naccess

[home]$ export PPI_LIBSVM=/usr/local/libsvm-3.11/svm-predict

[home]$ export PPI_LIBRARY=/usr/local/libraries/efindsiteppi-lib-oct2013

[home]$ export PPI_MODELS=/usr/local/efindsiteppi-1.0/mod/

[home]$ export PPI_ETHREADMAP=/usr/local/libraries/efindsiteppi-lib-oct2013/ethread-lib-jan2012.map

 

© Michal Brylinski
This website is hosted at the CCT