eFindSitePPI Standalone Package

eFindSitePPI detects protein binding sites and residues using meta-threading. It also predicts interfacial geometry and specific interactions stabilizing protein-protein complexes, such as hydrogen bonds, salt bridges, aromatic and hydrophobic interactions.
If you use eFindSitePPI, please cite the following paper:

eFindSitePPI is also available as a webserver. Datasets are available for download from here. See the manual for the details on the output file format.

eFindSitePPI is free of charge under the terms of GNU General Public License for non-commercial use. It is distributed without any warranty, but with best wishes.


Source codes

Version (hover) Download Size MD5  

1.0 efindsiteppi-1.0.tar.gz 11M 4a292e4cdbd447d9ac61d618c5ddda61  


Template libraries

Version (hover) Download Size MD5  

Oct 2013 latest efindsiteppi-lib-oct2013.tar.gz 31G ef3c3e0bf7f14ce48d6d612d9d9b6723  


eThread mapping files

eFindSitePPI/eThread library Download Size MD5  

Oct 2013/Apr 2014 efindsiteppi-lib-oct2013-apr2014.map.gz 0.16M 0273e8c1b0f9536bdac40a67fd13738e  
Oct 2013/Jan 2012 efindsiteppi-lib-oct2013-jan2012.map.gz 0.15M 05b85e1759f0bf004012f6a520a5577d  


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