Does eFindSite run under Mac OSX?

Yes, eFindSite (1.1 and later) runs under Mac OSX. You need gcc 4.4 compiler as explained in the manual. Also, Affinity Propagation is disabled, so binding pockets are identified using an average linkage clustering algorithm.

I suspect that my protein binds a particular ligand; can eFindSite dock that specific ligand?

eFindSite can predict binding pockets and binding residues. Then you can use ligand docking software, e.g. eSimDock, to dock your ligand to the predicted pocket(s).

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